PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_027598
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family LBD
Protein Properties Length: 216aa    MW: 23600.4 Da    PI: 6.4001
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_027598genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.61e-3871071100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +C aCk+lrrkC+++Cv+apyf  +q +++fa vh++FGas+v+kll +lp ++r+da+++++yeA ar++dPvyG+v+++++lqqq+++l++e++ l
  DCAR_027598   7 SCGACKFLRRKCTSECVFAPYFSYDQsANHFAKVHRVFGASKVSKLLLHLPVHRRSDAAATIAYEALARMHDPVYGCVSHVFALQQQVACLQHEIDIL 104
                  6***********************9978*******************************************************************999 PP

       DUF260  98 kee 100
                  +++
  DCAR_027598 105 NNQ 107
                  887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.0266108IPR004883Lateral organ boundaries, LOB
PfamPF031956.6E-377104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MTGPGSSCGA CKFLRRKCTS ECVFAPYFSY DQSANHFAKV HRVFGASKVS KLLLHLPVHR  60
RSDAAATIAY EALARMHDPV YGCVSHVFAL QQQVACLQHE IDILNNQMAN QAFQARNNGA  120
FGATNNPSVG FQFDSQNNEN MTNCATQSQM LLNGGVTADN QEFHCQINTT LPTLYGCEEH  180
MYNVPSDIDL PESVSGGMNQ EIYVPFLWTG SSCSS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002277994.11e-72PREDICTED: LOB domain-containing protein 33
SwissprotQ9LHS81e-53LBD33_ARATH; LOB domain-containing protein 33
TrEMBLD7TLQ31e-72D7TLQ3_VITVI; Putative uncharacterized protein
STRINGVIT_13s0019g02060.t013e-72(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA127691521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.17e-55LOB domain-containing protein 33